fitness_private.h

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#ifndef _FITNESS_PRIVATE_H
#define _FITNESS_PRIVATE_H

/* Header to be included just by files in the fitness/ directory
 */
#include <hpchain.h>
#include <int3d.h>

/**********************************
 *    FitnessCalc Procedures      *
 **********************************/

#define MAX_MEMORY ((long int) 4*1E9) // Max total size of memory allocated

typedef struct FitnessCalc_ {
    const HPElem * hpChain;
    int hpSize;
    void *space3d;
    int axisSize;
    double maxGyration;
} FitnessCalc;

typedef struct {
    double x;
    double y;
    double z;
} DPoint;

typedef struct {
    double first;
    double second;
} DPair;

typedef struct {
    int first;
    int second;
} IPair;

typedef struct {
    int first;
    int second;
    int third;
} ITriple;

typedef struct {
    int hh, pp, hp, hb, pb, bb;
    int collisions;
} BeadMeasures;

FitnessCalc FitnessCalc_get(); // Returns the FIT_BUNDLE of the protein being assessed.
BeadMeasures proteinMeasures(const int3d *BBbeads, const int3d *SCbeads, const HPElem *hpChain, int hpSize);

#endif