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ElfPSP_ParallelABC
Protein Structure Prediction using Parallel Artificial Bee Colony Optimization
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| ▼ src | |
| ▼ abc_alg | |
| abc_alg.h | Public header file with routine for performing prediction of a protein structure |
| hive.h | Routines for manipulating the bee hive global object |
| ▼ elf_tree_comm | |
| elf_tree_comm.h | Efficient scatter/gather routines that use a tree-like communication pattern |
| ▼ fitness | |
| CUDA_header.h | CUDA routines for calculating collisions and contacts among a beads |
| fitness.h | Public header file with routines for calculating the fitness of a protein represented as a chain of relative movements + hp chain |
| fitness_private.h | Private header file solely for usage by fitness files |
| gyration.h | Routines for calculating gyration of a vector of beads |
| ▼ solution | |
| solution.h | Routines for manipulating Solution objects, such as creation, randomization, perturbation etc |
| solution_mpi.h | Routines for transmitting Solution objects to and from other nodes within an MPI environment |
| solution_structure_private.h | Holds the opaque structure Solution, which shouldn't be modified by files other than solution files |
| config.h | Routines for manipulating the configuration YML file |
| hpchain.h | Routines for handling HP chains |
| int3d.h | Routines for mathematical manipulation of vectors and points in the integer space |
| movchain.h | Routines for managing chains of MovElem units |
| movelem.h | Routines for manipulating MovElem units, which represent relative movements within a protein |
| random.h | Routines for random number generation |
1.8.13